COMBINE specifications

Name of the specification Identifier (in the combine.specifications collection) Location node
Biological Pathway Exchange format biopax standards/biopax 86
BioPAX Level 1 biopax.level-1 standards/biopax/level-1 89
BioPAX Level 2 biopax.level-2 standards/biopax/level-2 88
BioPAX Level 3 biopax.level-3 standards/biopax/level-3 87
CellML cellml standards/cellml 93
CellML 1.0 cellml.1.0 standards/cellml/1/0 93
CellML 1.1 cellml.1.1 standards/cellml/1/1 94
COMBINE archive omex standards/omex 161
COMBINE archive RC1 omex.RC-1 standards/omex/RC-1 174
COMBINE archive RC2 omex.RC-2 standards/omex/RC-2 176
COMBINE archive Version 1 omex.version-1 standards/omex/version-1 180
COMBINE archive manifest omex-manifest standards/omex-manifest 156
COMBINE archive metadata omex-metadata standards/omex-metadata 157
GenMAPP Pathway Markup Language gpml standards/gpml 102
Systems Biology Graphical Notation sbgn standards/sbgn 52
SBGN Activity Flow language sbgn.af standards/sbgn/af 66
SBGN AF Level 1 sbgn.af.level-1 standards/sbgn/af/level-1/version-1/2 208
SBGN AF Level 1 Version 1 sbgn.af.level-1.version-1 standards/sbgn/af/level-1/version-1/2 208
SBGN AF Level 1 Version 1.0 sbgn.af.level-1.version-1.0 standards/sbgn/af/level-1/version-1/0 67
SBGN AF Level 1 Version 1.2 sbgn.af.level-1.version-1.2 standards/sbgn/af/level-1/version-1/2 208
SBGN ER sbgn.er standards/sbgn/er 57
SBGN ER Level 1 sbgn.er.level-1 standards/sbgn/er/level-1/version-2 201
SBGN ER Level 1 Version 1 sbgn.er.level-1.version-1 standards/sbgn/er/level-1/version-1/2 56
SBGN ER Level 1 Version 1.0 sbgn.er.level-1.version-1.0 standards/sbgn/er/level-1/version-1/0 60
SBGN ER Level 1 Version 1.1 sbgn.er.level-1.version-1.1 standards/sbgn/er/level-1/version-1/1 59
SBGN ER Level 1 Version 1.2 sbgn.er.level-1.version-1.2 standards/sbgn/er/level-1/version-1/2 56
SBGN ER Level 1 Version 2 sbgn.er.level-1.version-2 standards/sbgn/er/level-1/version-2 201
SBGN PD sbgn.pd standards/sbgn/pd 61
SBGN PD Level 1 sbgn.pd.level-1 standards/sbgn/pd/level-1/version-1/3 62
SBGN PD Level 1 Version 1 sbgn.pd.level-1.version-1 standards/sbgn/pd/level-1/version-1/3 62
SBGN PD Level 1 Version 1.0 sbgn.pd.level-1.version-1.0 standards/sbgn/pd/level-1/version-1/0 65
SBGN PD Level 1 Version 1.1 sbgn.pd.level-1.version-1.1 standards/sbgn/pd/level-1/version-1/1 64
SBGN PD Level 1 Version 1.2 sbgn.pd.level-1.version-1.2 standards/sbgn/pd/level-1/version-1/2 63
SBGN PD Level 1 Version 1.3 sbgn.pd.level-1.version-1.3 standards/sbgn/pd/level-1/version-1/3 62
Systems Biology Markup Language sbml standards/sbml 55
SBML Level 1 sbml.level-1 standards/sbml/level-1/version-2 78
SBML Level 1 Version 1 sbml.level-1.version-1 standards/sbml/level-1/version-1 79
SBML Level 1 Version 2 sbml.level-1.version-2 standards/sbml/level-1/version-2 78
SBML Level 2 sbml.level-2 standards/sbml/level-2/version-5/release-1 192
SBML Level 2 Version 1 sbml.level-2.version-1 standards/sbml/level-2/version-1 84
SBML Level 2 Version 2 sbml.level-2.version-2 standards/sbml/level-2/version-2 83
SBML Level 2 Version 3 sbml.level-2.version-3 standards/sbml/level-2/version-3/release-2 81
SBML Level 2 Version 3 Release 1 sbml.level-2.version-3.release-1 standards/sbml/level-2/version-3/release-1 82
SBML Level 2 Version 3 Release 2 sbml.level-2.version-3.release-2 standards/sbml/level-2/version-3/release-2 81
SBML Level 2 Version 4 sbml.level-2.version-4 standards/sbml/level-2/version-4/release-1 80
SBML Level 2 Version 4 Release 1 sbml.level-2.version-4.release-1 standards/sbml/level-2/version-4/release-1 80
SBML Level 2 Version 5 sbml.level-2.version-5 standards/sbml/level-2/version-5/release-1 192
SBML Level 2 Version 5 Release Candidate 1 sbml.level-2.version-5.RC-1 standards/sbml/level-2/version-5/RC-1 185
SBML Level 2 Version 5 Release 1 sbml.level-2.version-5.release-1 standards/sbml/level-2/version-5/release-1 192
SBML Level 3 sbml.level-3 standards/sbml/level-3/version-1/core/release-2 216
SBML Level 3 Version 1 sbml.level-3.version-1 standards/sbml/level-3/version-1/core/release-2 216
SBML Level 3 Version 1 Core sbml.level-3.version-1.core standards/sbml/level-3/version-1/core/release-2 216
SBML Level 3 Version 1 Core Release 1 sbml.level-3.version-1.core.release-1 standards/sbml/level-3/version-1/core/release-1 85
SBML Level 3 Version 1 Core Release 2 sbml.level-3.version-1.core.release-2 standards/sbml/level-3/version-1/core/release-2 216
SBML Level 3 Hierarchical Model Composition Package sbml.level-3.version-1.comp standards/sbml/level-3/version-1/comp/version-1/release-2 131
SBML Level 3 Hierarchical Model Composition Package Version 1 sbml.level-3.version-1.comp.version-1 standards/sbml/level-3/version-1/comp/version-1/release-2 131
SBML Level 3 Hierarchical Model Composition Package Version 1 Release 1 sbml.level-3.version-1.comp.version-1.release-1 standards/sbml/level-3/version-1/comp/version-1/release-1 120
SBML Level 3 Hierarchical Model Composition Package Version 1 Release 2 sbml.level-3.version-1.comp.version-1.release-2 standards/sbml/level-3/version-1/comp/version-1/release-2 131
SBML Level 3 Groups Package sbml.level-3.version-1.groups standards/sbml/level-3/version-1/groups/version-1/release-1 205
SBML Level 3 Groups Package Version 1 sbml.level-3.version-1.groups.version-1 standards/sbml/level-3/version-1/groups/version-1/release-1 205
SBML Level 3 Groups Package Version 1 Release 1 sbml.level-3.version-1.groups.version-1.release-1 standards/sbml/level-3/version-1/groups/version-1/release-1 205
SBML Level 3 Flux Balance Constraints Package sbml.level-3.version-1.fbc standards/sbml/level-3/version-1/fbc/version-1/release-1 128
SBML Level 3 Flux Balance Constraints Package Version 1 sbml.level-3.version-1.fbc.version-1 standards/sbml/level-3/version-1/fbc/version-1/release-1 128
SBML Level 3 Flux Balance Constraints Package Version 1 Release 1 sbml.level-3.version-1.fbc.version-1.release-1 standards/sbml/level-3/version-1/fbc/version-1/release-1 128
SBML Level 3 Flux Balance Constraints Package Version 2 sbml.level-3.version-1.fbc.version-2 standards/sbml/level-3/version-1/fbc/version-2/release-1 198
SBML Level 3 Flux Balance Constraints Package Version 2 Release 1 sbml.level-3.version-1.fbc.version-2.release-1 standards/sbml/level-3/version-1/fbc/version-2/release-1 198
SBML Level 3 Qualitative Models Package sbml.level-3.version-1.qual standards/sbml/level-3/version-1/qual/version-1/release-1 136
SBML Level 3 Qualitative Models Package Version 1 sbml.level-3.version-1.qual.version-1 standards/sbml/level-3/version-1/qual/version-1/release-1 136
SBML Level 3 Qualitative Models Package Version 1 Release 1 sbml.level-3.version-1.qual.version-1.release-1 standards/sbml/level-3/version-1/qual/version-1/release-1 136
SBML Level 3 Layout Package sbml.level-3.version-1.layout standards/sbml/level-3/version-1/layout/version-1/release-1 142
SBML Level 3 Layout Package Version 1 sbml.level-3.version-1.layout.version-1 standards/sbml/level-3/version-1/layout/version-1/release-1 142
SBML Level 3 Layout Package Version 1 Release 1 sbml.level-3.version-1.layout.version-1.release-1 standards/sbml/level-3/version-1/layout/version-1/release-1 142
Synthetic Biology Open Language sbol standards/sbol 170
SBOL version 1.1.0 sbol.version-1.1.0 standards/sbol/version-1.1.0 169
SBOL version 2.0.0 sbol.version-2.0.0 standards/sbol/version-2.0.0 193
SBOL Visual sbol-visual standards/sbol-visual/version-1.0.0 194
SBOL Visual version 1.0.0 sbol-visual.version-1.0.0 standards/sbol-visual/version-1.0.0 194
Simulation Experiment Description Markup Language sed-ml standards/sed-ml 72
SED-ML Level 1 sed-ml.level-1 standards/sed-ml/level-1/version-2 154
SED-ML Level 1 Version 1 sed-ml.level-1.version-1 standards/sed-ml/level-1/version-1 73
SED-ML Level 1 Version 2 sed-ml.level-1.version-2 standards/sed-ml/level-1/version-2 154
SED-ML Level 1 Version 2 RC2 sed-ml.level-1.version-2.RC2 standards/sed-ml/level-1/version-2/RC2 153
SED-ML Level 1 Version 2 RC sed-ml.level-1.version-2.RC standards/sed-ml/level-1/version-2/RC 149
SED-ML Level 1 Version 3 draft 1 sed-ml.level-1.version-3.draft-1 standards/sed-ml/level-1/version-3/draft-1 177
Nested Simulations / Tasks sed-ml.proposal.nested-simulations standards/sed-ml/proposal/nested-simulations/ 106
Frank Bergmann's Simple Nested Simulation proposal version 1 sed-ml.proposal.nested-simulations.FB.version-1 standards/sed-ml/proposal/nested-simulations/FB/version-1 90
Frank Bergmann's Simple Nested Simulation proposal version 2 sed-ml.proposal.nested-simulations.FB.version-2 standards/sed-ml/proposal/nested-simulations/FB/version-2 91
Frank Bergmann's Simple Nested Simulation proposal version 3 sed-ml.proposal.nested-simulations.FB.version-3 standards/sed-ml/proposal/nested-simulations/FB/version-3 104
Richard Adams' Algorithm class proposal version 1 sed-ml.proposal.kisao.RA.version-1 standards/sed-ml/proposal/kisao/RA/version-1 110
TErminology for the Description of DYnamics teddy standards/teddy 127
TEDDY rel-2014-04-24 teddy.rel-2014-04-24 standards/teddy/rel-2014-04-24 165