HARMONY 2011 - List of Attendees

Name Affliation Group/Project
Bulent Arman AksoyTri-I Training Program in Computational Biology and MedicinePatch: Alignment and integration of pathways that are represented in BioPAX
Kira AnthonyNature Publishing GroupNCI-Nature Pathway Interaction Database (PID), BioPAX
Marco AntoniottiUniversità degli Studi di Milano BicoccaSimulation of Intestinal Crypts
Nadia AnwarMSKCCBioPAX
Ferhat AyUniversity of Florida
Ozgun BaburMSKCCChiBE, Factoid, Paxtools
Gary BaderUniversity of TorontoBioPAX, Pathway Commons, cPath, Cytoscape, Cytoscape Web, GeneMANIA
Frank BergmannCalifornia Institute of TechnologyModeling and Simulation software for Systems Biology based on SBML, SBGN, SED-ML
Michael BlinovCenter for Cell Analysis and Modeling, University of Connecticut Health CenterSyBiL BioNetGen
Mike CoolingAuckland Bioengineering InstituteCellML metadata specifications, CellML model repository, CellML model construction
Tobias CzaudernaIPK Gatersleben, GermanySBGN-ED, LibSBGN
Jürgen EilsDKFZ
Emek DemirMSKCCBioPAX SBGN Pathway Commons
Peter D'EustachioNYU School of MedicineReactome pathways database
Ashok Reddy DinasarapuUniversity of California, San DiegoThe Signaling Gateway Molecule Pages (SGMP) database, BioPAX
Ugur DogrusozBilkent UniversityPATIKA, ChiBE (Chisio BioPAX Editor), VISIBIOweb
Michele DonatoWayne State UniversitySignaling Pathway Analysis, modeling of complex biological systems, ontologies for the description of biological systems
Andreas DrägerCenter for Bioinformatics Tuebingen (ZBIT)JSBML, SBMLsqueezer, SBML2LaTeX, SBMLsimulator, KEGGtranslator
Michel DumontierCarleton UniversityBio2RDF, formalization and reasoning about SBML + BioPAX models, SADI semantic web services
Franco du PreezThe University of ManchesterSysMO-SEEK
Andrew GibsonUniversiteit van Amsterdam
Martin GolebiewskiHITS gGmbHSABIO-RK, SBML, MIRIAM
Martin GraesslinGerman Cancer Research CenterJUMMP Project for developing a new Software base for Biomodels DB
Benjamin GrossMSKCCPathway Commons, cpath/cpath2
Robin HawOICRReactome, SBGN-based visualization, SBML and BioPAX, PSI-MITAB
Ron HenkelUniversity of Rostockmodel retrieval & ranking, model versioning
Stefan HoopsVirginia Bioinformatics InstituteCOPASI, SBML
Michael HuckaCalifornia Institute of TechnologySBML, Biomodels.net
Daniel HydukeUniversity of California, San DiegoThe COBRA Toolbox SBML and other sys bio standards
Gael JalowickiEMBL-EBIgraphical representation of BioModels Database
Nick JutyEMBL-EBISBO, MIRIAM
Sarah KeatingEMBL-EBIAll SBML-related software
Martina KutmonDepartment of Bioinformatics, BiGCaTPathVisio
Camille LaibeEMBL-EBIMIRIAM standard, MIRIAM Resources, BioModels Database, SBO
Nicolas Le NovèreEMBL-EBIBioModels Database, BioPAX, MIASE, MIRIAM, SBGN, SBML, SBO, SED-ML
Joanne LucianoTetherless World Constellation, Rensselaer Polytechnic Institute
Augustin LunaNational Cancer Institute / Boston UniversityMIM, BioPAX, SBGN
Huaiyu MiUSCPanther Pathway, SBGN
Stuart MoodieUniversity of EdinburghSBGN
Ion I. MoraruUniversity of Connecticut Health CenterjlibSEDML, SBML spatial, BioPAX@VCell
Chris MyersUniversity of Utah iBioSim
David NickersonAuckland Bioengineering Institute, The University of AucklandCellML, SED-ML, model annotation, model repositories
Tim Ogilvie
Brett OlivierCentrum Wiskunde & Informatica (CWI)Python Simulator for Cellular Systems PySCeS SBML
Suzanne PaleySRI InternationalBioPAX export/import from BioCyc, Pathway Tools
Alexander PicoGladstone InstitutesGenMAPP, Cytoscape and WikiPathways. BioPAX and SBGN
Igor RodchenkovUniversity of TorontoPathway Commons, BioPAX, BioPAX Validator, BridgeDb (helped with)
Nicolas RodriguezEMBL-EBIJSBML, libSBML, Biomodels DB, SBMLeditor, SBML Converters - a set of converters from SBML to other formats, like BioPax, CellML, XPP, SBGN/SVG
Oliver RuebenackerVirtual CellVirtual Cell
Sven SahleUniversity of HeidelbergCOPASI -- a software tool for editing, simulation and analysis of biochemical computational models
Falk SchreiberIPK Gatersleben & University Halle-WittenbergSBGN, automatic layout, SBGN-ED, Vanted, Petri nets, modelling, visualisation
Neil SwainstonManchester Centre for Integrative Systems BiologyMCISB,SBML
Lucian SmithUniversity of Washington, SeattleAntimony, libSBML
Anatoly SorokinInstitute of Cell Biophysics RAS
Andrea SplendianiRothamsted Research, UK BioPAX
Martijn van IerselNetherlands Consortium for Systems BiologyBioPAX, LibSBGN
Alice VillegerUniversity of ManchesterArcadia: a visualization tool for metabolic pathways, LibSBGN: software implementation of SBGN
Katja WegnerCooperative State University KarlsruheSBML, SBGN
Tommy YuAuckland Bioengineering Institute Physiome Model Repository 2
Anna ZhukovaEMBL-EBIKinetic Simulation Algorithm Ontology